IL_9YQ1_211

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9YQ1|1|9|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|G|611
9YQ1|1|9|U|612
9YQ1|1|9|G|613
9YQ1|1|9|C|614
9YQ1|1|9|C|615
9YQ1|1|9|A|616
9YQ1|1|9|G|617
*
9YQ1|1|9|C|624
9YQ1|1|9|G|625
9YQ1|1|9|G|626
9YQ1|1|9|U|627
9YQ1|1|9|A|628
9YQ1|1|9|A|629
9YQ1|1|9|U|630
9YQ1|1|9|U|631
9YQ1|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain DD

Ribosomal protein S3

Chain XX

uS12

Chain ee

40S ribosomal protein S30