IL_9YQ1_246

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9YQ1|1|9|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ1_246 not in the Motif Atlas

Homologous match to IL_9H3G_218

Geometric discrepancy: 0.0873

The information below is about IL_9H3G_218

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9YQ1|1|9|G|1325
9YQ1|1|9|U|1326
9YQ1|1|9|G|1327
*
9YQ1|1|9|C|1502
9YQ1|1|9|C|1503

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

S10_plectin domain-containing protein

Chain dd

eS29