IL_9ZF2_003

3D structure

PDB id

9ZF2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZF2|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZF2_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5639

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZF2|1|A|G|144
9ZF2|1|A|G|145
9ZF2|1|A|A|146
9ZF2|1|A|A|147
9ZF2|1|A|A|148
9ZF2|1|A|G|149
*
9ZF2|1|A|C|176
9ZF2|1|A|G|177
9ZF2|1|A|A|178
9ZF2|1|A|U|179
9ZF2|1|A|U|180
9ZF2|1|A|A|181
9ZF2|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains