IL_9ZFD_003

3D structure

PDB id

9ZFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZFD|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZFD_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.3254

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZFD|1|A|G|144
9ZFD|1|A|G|145
9ZFD|1|A|A|146
9ZFD|1|A|A|147
9ZFD|1|A|A|148
9ZFD|1|A|G|149
*
9ZFD|1|A|C|176
9ZFD|1|A|G|177
9ZFD|1|A|A|178
9ZFD|1|A|U|179
9ZFD|1|A|U|180
9ZFD|1|A|A|181
9ZFD|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains