IL_9ZGM_003

3D structure

PDB id

9ZGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZGM|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZGM_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4391

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZGM|1|A|G|144
9ZGM|1|A|G|145
9ZGM|1|A|A|146
9ZGM|1|A|A|147
9ZGM|1|A|A|148
9ZGM|1|A|G|149
*
9ZGM|1|A|C|176
9ZGM|1|A|G|177
9ZGM|1|A|A|178
9ZGM|1|A|U|179
9ZGM|1|A|U|180
9ZGM|1|A|A|181
9ZGM|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains