IL_9ZGY_003

3D structure

PDB id

9ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9ZGY|1|A|A|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZGY_003 not in the Motif Atlas

Homologous match to IL_1NBS_009

Geometric discrepancy: 0.5566

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9ZGY|1|A|U|191
9ZGY|1|A|G|192
*
9ZGY|1|A|U|238
9ZGY|1|A|A|239
9ZGY|1|A|A|240
9ZGY|1|A|A|241

Current chains

Chain A

RNase P RNA

Nearby chains