IL_9ZH7_003

3D structure

PDB id

9ZH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 22

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZH7|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZH7_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.3572

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZH7|1|A|G|144
9ZH7|1|A|G|145
9ZH7|1|A|A|146
9ZH7|1|A|A|147
9ZH7|1|A|A|148
9ZH7|1|A|G|149
*
9ZH7|1|A|C|176
9ZH7|1|A|G|177
9ZH7|1|A|A|178
9ZH7|1|A|U|179
9ZH7|1|A|U|180
9ZH7|1|A|A|181
9ZH7|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains