IL_9ZH9_003

3D structure

PDB id

9ZH9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 23

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZH9|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZH9_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.532

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZH9|1|A|G|144
9ZH9|1|A|G|145
9ZH9|1|A|A|146
9ZH9|1|A|A|147
9ZH9|1|A|A|148
9ZH9|1|A|G|149
*
9ZH9|1|A|C|176
9ZH9|1|A|G|177
9ZH9|1|A|A|178
9ZH9|1|A|U|179
9ZH9|1|A|U|180
9ZH9|1|A|A|181
9ZH9|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains