IL_9ZHP_014

3D structure

PDB id

9ZHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 36

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGGAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZHP_014 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1929

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9ZHP|1|A|C|347
9ZHP|1|A|G|348
9ZHP|1|A|G|349
9ZHP|1|A|A|350
9ZHP|1|A|G|351
*
9ZHP|1|A|C|378
9ZHP|1|A|G|379
9ZHP|1|A|A|380
9ZHP|1|A|A|381
9ZHP|1|A|G|382

Current chains

Chain A

RNase P RNA

Nearby chains