9ZHP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9ZHP_002 | 1/A/69:76 | No text annotation | geometric HL_8B0X_041 HL_13999.5 | |
| HL_9ZHP_003 | 1/A/97:108 | No text annotation | ||
| HL_9ZHP_007 | 1/A/260:272 | No text annotation | ||
| HL_9ZHP_008 | 1/A/288:297 | No text annotation | geometric HL_2A64_005 HL_48408.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9ZHP_001 | No text annotation | ||
| HL_9ZHP_004 | No text annotation | ||
| HL_9ZHP_005 | No text annotation | ||
| HL_9ZHP_006 | GNRA | ||
| HL_9ZHP_009 | No text annotation | ||
| HL_9ZHP_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9ZHP_001 | 1/A/66:68, 1/A/77:78 | Single bulged U | geometric IL_2A64_003 IL_97561.7 | |
| IL_9ZHP_002 | 1/A/114:115, 1/A/136:138 | Single bulged A | homologous IL_1NBS_005 IL_14190.4 | |
| IL_9ZHP_012 | 1/A/284:288, 1/A/297:301 | No text annotation | geometric IL_8GLP_284 IL_15190.4 | |
| IL_9ZHP_013 | 1/A/313:315, 1/A/322:324 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.3 | |
| IL_9ZHP_014 | 1/A/347:351, 1/A/378:382 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9ZHP_003 | Single stack bend | ||
| IL_9ZHP_004 | No text annotation | ||
| IL_9ZHP_005 | No text annotation | ||
| IL_9ZHP_006 | No text annotation | ||
| IL_9ZHP_007 | Minor groove platform | ||
| IL_9ZHP_008 | Major groove intercalation | ||
| IL_9ZHP_009 | Isolated non-canonical cWW pair | ||
| IL_9ZHP_010 | No text annotation | ||
| IL_9ZHP_011 | No text annotation | ||
| IL_9ZHP_015 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9ZHP_001 | 1/A/13:15, 1/A/344:345, 1/A/384:402 | No text annotation | ||
| J3_9ZHP_002 | 1/A/62:63, 1/A/81:87, 1/A/249:250 | No text annotation | ||
| J3_9ZHP_003 | 1/A/140:143, 1/A/184:190, 1/A/242:243 | No text annotation | ||
| J4_9ZHP_001 | 1/A/91:92, 1/A/113:114, 1/A/138:139, 1/A/244:245 | RNase P junction | homologous J4_1NBS_002 J4_86610.2 | |
| J6_9ZHP_001 | 1/A/21:23, 1/A/44:58, 1/A/254:258, 1/A/274:278, 1/A/307:309, 1/A/328:338 | No text annotation |
Problematic loops
No problematic loops
Coloring options: