IL_9ZHT_003

3D structure

PDB id

9ZHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 39

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZHT|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZHT_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4858

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZHT|1|A|G|144
9ZHT|1|A|G|145
9ZHT|1|A|A|146
9ZHT|1|A|A|147
9ZHT|1|A|A|148
9ZHT|1|A|G|149
*
9ZHT|1|A|C|176
9ZHT|1|A|G|177
9ZHT|1|A|A|178
9ZHT|1|A|U|179
9ZHT|1|A|U|180
9ZHT|1|A|A|181
9ZHT|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains