IL_9ZI6_003

3D structure

PDB id

9ZI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 52

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZI6|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZI6_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4874

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZI6|1|A|G|144
9ZI6|1|A|G|145
9ZI6|1|A|A|146
9ZI6|1|A|A|147
9ZI6|1|A|A|148
9ZI6|1|A|G|149
*
9ZI6|1|A|C|176
9ZI6|1|A|G|177
9ZI6|1|A|A|178
9ZI6|1|A|U|179
9ZI6|1|A|U|180
9ZI6|1|A|A|181
9ZI6|1|A|C|182

Current chains

Chain A

RNase P RNA

Nearby chains