IL_9ZI8_003

3D structure

PDB id

9ZI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZI8|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZI8_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.3934

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZI8|1|A|G|144
9ZI8|1|A|G|145
9ZI8|1|A|A|146
9ZI8|1|A|A|147
9ZI8|1|A|A|148
9ZI8|1|A|G|149
*
9ZI8|1|A|C|176
9ZI8|1|A|G|177
9ZI8|1|A|A|178
9ZI8|1|A|U|179
9ZI8|1|A|U|180
9ZI8|1|A|A|181
9ZI8|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains