IL_9ZIB_003

3D structure

PDB id

9ZIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZIB|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIB_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.3724

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZIB|1|A|G|144
9ZIB|1|A|G|145
9ZIB|1|A|A|146
9ZIB|1|A|A|147
9ZIB|1|A|A|148
9ZIB|1|A|G|149
*
9ZIB|1|A|C|176
9ZIB|1|A|G|177
9ZIB|1|A|A|178
9ZIB|1|A|U|179
9ZIB|1|A|U|180
9ZIB|1|A|A|181
9ZIB|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains