IL_9ZIJ_001

3D structure

PDB id

9ZIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 11

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9ZIJ|1|A|U|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIJ_001 not in the Motif Atlas

Geometric match to IL_2A64_003

Geometric discrepancy: 0.1445

The information below is about IL_2A64_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9ZIJ|1|A|G|66
9ZIJ|1|A|U|67
9ZIJ|1|A|G|68
*
9ZIJ|1|A|C|77
9ZIJ|1|A|C|78

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains