IL_9ZIK_003

3D structure

PDB id

9ZIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 12

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZIK|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIK_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5155

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZIK|1|A|G|144
9ZIK|1|A|G|145
9ZIK|1|A|A|146
9ZIK|1|A|A|147
9ZIK|1|A|A|148
9ZIK|1|A|G|149
*
9ZIK|1|A|C|176
9ZIK|1|A|G|177
9ZIK|1|A|A|178
9ZIK|1|A|U|179
9ZIK|1|A|U|180
9ZIK|1|A|A|181
9ZIK|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains