IL_9ZIM_009

3D structure

PDB id

9ZIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CAA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIM_009 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2695

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9ZIM|1|A|C|260
9ZIM|1|A|A|261
9ZIM|1|A|A|262
*
9ZIM|1|A|U|270
9ZIM|1|A|A|271
9ZIM|1|A|G|272

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component