IL_9ZIV_005

3D structure

PDB id

9ZIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 17

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIV_005 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.343

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9ZIV|1|A|A|155
9ZIV|1|A|C|156
9ZIV|1|A|G|157
*
9ZIV|1|A|U|169
9ZIV|1|A|A|170
9ZIV|1|A|U|171

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains