IL_9ZIW_003

3D structure

PDB id

9ZIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 18

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZIW|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIW_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4511

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZIW|1|A|G|144
9ZIW|1|A|G|145
9ZIW|1|A|A|146
9ZIW|1|A|A|147
9ZIW|1|A|A|148
9ZIW|1|A|G|149
*
9ZIW|1|A|C|176
9ZIW|1|A|G|177
9ZIW|1|A|A|178
9ZIW|1|A|U|179
9ZIW|1|A|U|180
9ZIW|1|A|A|181
9ZIW|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains