IL_9ZIW_012

3D structure

PDB id

9ZIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 18

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*UUGCAG

Length

8 nucleotides

Bulged bases

9ZIW|1|A|G|372, 9ZIW|1|A|C|373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIW_012 not in the Motif Atlas

Geometric match to IL_4PDB_002

Geometric discrepancy: 0.368

The information below is about IL_4PDB_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.4

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

9ZIW|1|A|C|354
9ZIW|1|A|G|355
*
9ZIW|1|A|U|370
9ZIW|1|A|U|371
9ZIW|1|A|G|372
9ZIW|1|A|C|373
9ZIW|1|A|A|374
9ZIW|1|A|G|375

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains