IL_9ZIX_003

3D structure

PDB id

9ZIX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 20

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9ZIX|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIX_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5397

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ZIX|1|A|G|144
9ZIX|1|A|G|145
9ZIX|1|A|A|146
9ZIX|1|A|A|147
9ZIX|1|A|A|148
9ZIX|1|A|G|149
*
9ZIX|1|A|C|176
9ZIX|1|A|G|177
9ZIX|1|A|A|178
9ZIX|1|A|U|179
9ZIX|1|A|U|180
9ZIX|1|A|A|181
9ZIX|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains