IL_9ZN2_063

3D structure

PDB id

9ZN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome initiation complex bound to IF1 and extended IF2-GDPCP (70S IC*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9ZN2|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZN2_063 not in the Motif Atlas

Homologous match to IL_8B0X_127

Geometric discrepancy: 0.0693

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9ZN2|1|A|C|1686
9ZN2|1|A|G|1687
9ZN2|1|A|U|1688
9ZN2|1|A|A|1689
9ZN2|1|A|A|1690
9ZN2|1|A|C|1691
*
9ZN2|1|A|G|1696
9ZN2|1|A|G|1697
9ZN2|1|A|A|1698
9ZN2|1|A|G|1699
9ZN2|1|A|A|1700
9ZN2|1|A|A|1701
9ZN2|1|A|G|1702

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA