J3_10PX_031

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

10PX|1|1a|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_031 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1771

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

10PX|1|1a|C|990
10PX|1|1a|U|991
10PX|1|1a|U|992
10PX|1|1a|G|993
10PX|1|1a|A|994
10PX|1|1a|C|995
10PX|1|1a|A|996
10PX|1|1a|U|997
*
10PX|1|1a|A|1044
10PX|1|1a|C|1045
10PX|1|1a|A|1046
10PX|1|1a|G|1047
*
10PX|1|1a|C|1210
10PX|1|1a|U|1211
10PX|1|1a|U|1212
10PX|1|1a|A|1213
10PX|1|1a|C|1214
10PX|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z