J3_10PX_046

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

10PX|1|2A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_046 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0868

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

10PX|1|2A|C|1298
10PX|1|2A|G|1299
10PX|1|2A|U|1300
10PX|1|2A|A|1301
10PX|1|2A|A|1302
10PX|1|2A|G|1303
*
10PX|1|2A|C|1625
10PX|1|2A|G|1626
10PX|1|2A|G|1627
*
10PX|1|2A|U|1639
10PX|1|2A|C|1640
10PX|1|2A|A|1641
10PX|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains