J3_10PX_062

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_062 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1334

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

10PX|1|2a|C|936
10PX|1|2a|A|937
10PX|1|2a|A|938
10PX|1|2a|G|939
*
10PX|1|2a|C|1344
10PX|1|2a|U|1345
10PX|1|2a|A|1346
10PX|1|2a|G|1347
10PX|1|2a|U|1348
10PX|1|2a|A|1349
10PX|1|2a|A|1350
*
10PX|1|2a|U|1372
10PX|1|2a|G|1373
10PX|1|2a|A|1374
10PX|1|2a|A|1375
10PX|1|2a|U|1376
10PX|1|2a|A|1377
10PX|1|2a|C|1378
10PX|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA