Motif J3_25303.3 Version J3_25303.3 of this group appears in releases 3.95 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 3-16 | 4-5 | 4-15 | 6-16 | 7-15 | 7-16 | 8-9 | 9-14 | 10-13 | 11-12 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6CZR_061 | 6CZR | 0.1041 | 0 | 1a | SSU rRNA | C | 914 | A | 915 | A | 916 | G | 917 | * | C | 1326 | U | 1327 | A | 1328 | G | 1329 | U | 1330 | A | 1331 | A | 1332 | * | U | 1355 | G | 1356 | A | 1357 | A | 1358 | U | 1359 | A | 1360 | C | 1361 | G | 1362 | cWW | ntSH | csS | cWW | cSs | tWWa | tHH | ncSH | ntWH | tHS | cWW | |
| 2 | J3_4LFB_002 | 4LFB | 0.0000 | 0 | A | SSU rRNA | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | * | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | cWW | tSH | csS | cWW | cSs | tWWa | tHH | cSH | tWH | tHS | cWW | |
| 3 | J3_5J7L_052 | 5J7L | 0.0589 | 0 | AA | SSU rRNA | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | * | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | cWW | tSH | csS | cWW | cSs | tWWa | tHH | cSH | tWH | tHS | cWW | |
| 4 | J3_8CRE_078 | 8CRE | 0.5810 | 0 | CM | SSU rRNA | C | 1146 | C | 1147 | A | 1148 | G | 1149 | * | C | 1568 | U | 1569 | A | 1570 | G | 1571 | U | 1572 | A | 1573 | A | 1574 | * | U | 1596 | G | 1597 | A | 1598 | U | 1599 | U | 1600 | A | 1601 | C | 1602 | G | 1603 | cWW | csS | cWW | tWWa | tHH | cSH | tWH | tHS | cWW | |||
| 5 | J3_8P9A_076 | 8P9A | 0.5985 | 0 | sR | SSU rRNA | C | 1161 | C | 1162 | A | 1163 | G | 1164 | * | C | 1581 | U | 1582 | A | 1583 | G | 1584 | U | 1585 | A | 1586 | A | 1587 | * | U | 1609 | G | 1610 | A | 1611 | U | 1612 | U | 1613 | A | 1614 | C | 1615 | G | 1616 | cWW | csS | cWW | tWWa | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CUAGUAA*UGAAUACG | 3 |
| CCAG*CUAGUAA*UGAUUACG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*UAGUA*GAAUAC | 3 |
| CA*UAGUA*GAUUAC | 2 |
Release history
| Release | 3.95 |
|---|---|
| Date | 2025-03-26 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.32 | Max 0.61
Coloring options: