J3_10QM_010

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

10QM|1|I|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10QM_010 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2004

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

10QM|1|I|C|1298
10QM|1|I|G|1299
10QM|1|I|G|1300
10QM|1|I|A|1301
10QM|1|I|A|1302
10QM|1|I|G|1303
*
10QM|1|I|C|1625
10QM|1|I|A|1626
10QM|1|I|G|1627
*
10QM|1|I|C|1639
10QM|1|I|A|1640
10QM|1|I|A|1641
10QM|1|I|G|1642

Current chains

Chain I

23S ribosomal RNA

Nearby chains