J3_11BQ_007

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11BQ_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1139

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

11BQ|1|A|C|936
11BQ|1|A|A|937
11BQ|1|A|A|938
11BQ|1|A|G|939
*
11BQ|1|A|C|1344
11BQ|1|A|U|1345
11BQ|1|A|A|1346
11BQ|1|A|G|1347
11BQ|1|A|U|1348
11BQ|1|A|A|1349
11BQ|1|A|A|1350
*
11BQ|1|A|U|1372
11BQ|1|A|G|1373
11BQ|1|A|A|1374
11BQ|1|A|A|1375
11BQ|1|A|U|1376
11BQ|1|A|A|1377
11BQ|1|A|C|1378
11BQ|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9