J3_11BQ_011

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

11BQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11BQ_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1841

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

11BQ|1|A|C|990
11BQ|1|A|U|991
11BQ|1|A|U|992
11BQ|1|A|G|993
11BQ|1|A|A|994
11BQ|1|A|C|995
11BQ|1|A|A|996
11BQ|1|A|U|997
*
11BQ|1|A|A|1044
11BQ|1|A|C|1045
11BQ|1|A|A|1046
11BQ|1|A|G|1047
*
11BQ|1|A|C|1210
11BQ|1|A|U|1211
11BQ|1|A|U|1212
11BQ|1|A|A|1213
11BQ|1|A|C|1214
11BQ|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14