J3_11BQ_016

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

11BQ|1|A|U|1240, 11BQ|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11BQ_016 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.2592

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

11BQ|1|A|C|1237
11BQ|1|A|A|1238
11BQ|1|A|A|1239
11BQ|1|A|U|1240
11BQ|1|A|G|1241
*
11BQ|1|A|C|1296
11BQ|1|A|G|1297
11BQ|1|A|U|1298
11BQ|1|A|A|1299
11BQ|1|A|G|1300
11BQ|1|A|U|1301
11BQ|1|A|C|1302
11BQ|1|A|C|1303
*
11BQ|1|A|G|1334
11BQ|1|A|U|1335
11BQ|1|A|C|1336
11BQ|1|A|G|1337

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain M

Small ribosomal subunit protein uS13