J3_11DG_006

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11DG_006 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1658

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

11DG|1|A|C|936
11DG|1|A|A|937
11DG|1|A|A|938
11DG|1|A|G|939
*
11DG|1|A|C|1345
11DG|1|A|U|1346
11DG|1|A|A|1347
11DG|1|A|G|1348
11DG|1|A|U|1349
11DG|1|A|A|1350
11DG|1|A|A|1351
*
11DG|1|A|U|1373
11DG|1|A|G|1374
11DG|1|A|A|1375
11DG|1|A|A|1376
11DG|1|A|U|1377
11DG|1|A|A|1378
11DG|1|A|C|1379
11DG|1|A|G|1380

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9