J3_11DG_013

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

11DG|1|A|U|1241, 11DG|1|A|C|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11DG_013 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.3919

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

11DG|1|A|C|1238
11DG|1|A|A|1239
11DG|1|A|A|1240
11DG|1|A|U|1241
11DG|1|A|G|1242
*
11DG|1|A|C|1297
11DG|1|A|G|1298
11DG|1|A|U|1299
11DG|1|A|A|1300
11DG|1|A|G|1301
11DG|1|A|U|1302
11DG|1|A|C|1303
11DG|1|A|C|1304
*
11DG|1|A|G|1335
11DG|1|A|U|1336
11DG|1|A|C|1337
11DG|1|A|G|1338

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain M

Small ribosomal subunit protein uS13