J3_11EL_010

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

11EL|1|A|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11EL_010 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.097

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

11EL|1|A|C|990
11EL|1|A|U|991
11EL|1|A|U|992
11EL|1|A|G|993
*
11EL|1|A|C|1045
11EL|1|A|A|1046
11EL|1|A|G|1047
*
11EL|1|A|C|1211
11EL|1|A|U|1212
11EL|1|A|U|1213
11EL|1|A|A|1214
11EL|1|A|C|1215
11EL|1|A|G|1216

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14