J3_11FV_007

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1366

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

11FV|1|C|C|930
11FV|1|C|A|931
11FV|1|C|A|932
11FV|1|C|G|933
*
11FV|1|C|C|1338
11FV|1|C|U|1339
11FV|1|C|A|1340
11FV|1|C|G|1341
11FV|1|C|U|1342
11FV|1|C|A|1343
11FV|1|C|A|1344
*
11FV|1|C|U|1366
11FV|1|C|G|1367
11FV|1|C|A|1368
11FV|1|C|A|1369
11FV|1|C|U|1370
11FV|1|C|A|1371
11FV|1|C|C|1372
11FV|1|C|G|1373

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain p

Small ribosomal subunit protein uS9