J3_11FV_010

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

11FV|1|C|C|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_010 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.1348

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

11FV|1|C|C|984
11FV|1|C|U|985
11FV|1|C|U|986
11FV|1|C|G|987
*
11FV|1|C|C|1039
11FV|1|C|A|1040
11FV|1|C|G|1041
*
11FV|1|C|C|1204
11FV|1|C|U|1205
11FV|1|C|U|1206
11FV|1|C|A|1207
11FV|1|C|C|1208
11FV|1|C|G|1209

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain v

Small ribosomal subunit protein uS14