J3_11FV_015
3D structure
- PDB id
- 11FV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 11FV|1|C|U|1177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11FV_015 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1724
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
11FV|1|C|U|1110
11FV|1|C|G|1111
11FV|1|C|U|1112
*
11FV|1|C|A|1149
11FV|1|C|G|1150
11FV|1|C|A|1151
11FV|1|C|C|1152
11FV|1|C|U|1153
11FV|1|C|G|1154
11FV|1|C|C|1155
*
11FV|1|C|G|1169
11FV|1|C|A|1170
11FV|1|C|G|1171
11FV|1|C|G|1172
11FV|1|C|A|1173
11FV|1|C|A|1174
11FV|1|C|G|1175
11FV|1|C|G|1176
11FV|1|C|U|1177
11FV|1|C|G|1178
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS2
- Chain n
- Small ribosomal subunit protein uS7
- Chain p
- Small ribosomal subunit protein uS9
- Chain q
- Small ribosomal subunit protein uS10
- Chain v
- Small ribosomal subunit protein uS14
Coloring options: