J3_11FV_016

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

11FV|1|C|U|1234, 11FV|1|C|C|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_016 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.1686

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

11FV|1|C|C|1231
11FV|1|C|A|1232
11FV|1|C|A|1233
11FV|1|C|U|1234
11FV|1|C|G|1235
*
11FV|1|C|C|1290
11FV|1|C|G|1291
11FV|1|C|U|1292
11FV|1|C|A|1293
11FV|1|C|G|1294
11FV|1|C|U|1295
11FV|1|C|C|1296
11FV|1|C|C|1297
*
11FV|1|C|G|1328
11FV|1|C|U|1329
11FV|1|C|C|1330
11FV|1|C|G|1331

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain u

Small ribosomal subunit protein uS13