J3_11GG_002

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

11GG|1|C|C|48, 11GG|1|C|A|50, 11GG|1|C|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1491

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

11GG|1|C|G|46
11GG|1|C|C|47
11GG|1|C|C|48
11GG|1|C|U|49
11GG|1|C|A|50
11GG|1|C|A|51
11GG|1|C|C|52
*
11GG|1|C|G|353
11GG|1|C|G|354
11GG|1|C|G|355
11GG|1|C|G|356
11GG|1|C|A|357
11GG|1|C|A|358
11GG|1|C|U|359
11GG|1|C|A|360
11GG|1|C|U|361
*
11GG|1|C|A|387
11GG|1|C|G|388
11GG|1|C|C|389

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S12

Chain x

Small ribosomal subunit protein bS16