J3_11GG_008

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_008 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1593

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11GG|1|C|U|937
11GG|1|C|G|938
11GG|1|C|G|939
11GG|1|C|A|940
*
11GG|1|C|U|1229
11GG|1|C|A|1230
11GG|1|C|C|1231
*
11GG|1|C|G|1331
11GG|1|C|G|1332
11GG|1|C|A|1333
11GG|1|C|A|1334

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain p

Small ribosomal subunit protein uS9

Chain u

Small ribosomal subunit protein uS13