J3_11GG_009
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 11GG|1|C|A|969, 11GG|1|C|G|970, 11GG|1|C|A|972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11GG_009 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0935
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11GG|1|C|U|949
11GG|1|C|U|950
11GG|1|C|U|951
11GG|1|C|A|952
11GG|1|C|A|953
11GG|1|C|U|954
11GG|1|C|U|955
11GG|1|C|C|956
*
11GG|1|C|G|967
11GG|1|C|A|968
11GG|1|C|A|969
11GG|1|C|G|970
11GG|1|C|A|971
11GG|1|C|A|972
11GG|1|C|C|973
11GG|1|C|C|974
11GG|1|C|U|975
11GG|1|C|U|976
11GG|1|C|A|977
11GG|1|C|C|978
*
11GG|1|C|G|1215
11GG|1|C|G|1216
11GG|1|C|C|1217
11GG|1|C|U|1218
11GG|1|C|A|1219
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein uS19
- Chain q
- Small ribosomal subunit protein uS10
- Chain u
- Small ribosomal subunit protein uS13
- Chain v
- Small ribosomal subunit protein uS14
Coloring options: