J3_11GG_019
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 11GG|1|I|U|34, 11GG|1|I|U|448, 11GG|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11GG_019 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3788
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
11GG|1|I|C|32
11GG|1|I|C|33
11GG|1|I|U|34
11GG|1|I|G|35
*
11GG|1|I|C|445
11GG|1|I|G|446
11GG|1|I|A|447
11GG|1|I|U|448
11GG|1|I|A|449
11GG|1|I|G|450
11GG|1|I|U|451
11GG|1|I|G|452
11GG|1|I|A|453
11GG|1|I|A|454
11GG|1|I|C|455
11GG|1|I|C|456
11GG|1|I|A|457
11GG|1|I|G|458
11GG|1|I|U|459
11GG|1|I|A|460
11GG|1|I|C|461
*
11GG|1|I|G|468
11GG|1|I|G|469
11GG|1|I|A|470
11GG|1|I|A|471
11GG|1|I|A|472
11GG|1|I|G|473
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
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