J3_11GG_030

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGCAUAAGCCAGCUUGAC*GGUG*CAGGUC

Length

28 nucleotides

Bulged bases

11GG|1|I|U|2334, 11GG|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11GG|1|I|G|2330
11GG|1|I|G|2331
11GG|1|I|C|2332
11GG|1|I|A|2333
11GG|1|I|U|2334
11GG|1|I|A|2335
11GG|1|I|A|2336
11GG|1|I|G|2337
11GG|1|I|C|2338
11GG|1|I|C|2339
11GG|1|I|A|2340
11GG|1|I|G|2341
11GG|1|I|C|2342
11GG|1|I|U|2343
11GG|1|I|U|2344
11GG|1|I|G|2345
11GG|1|I|A|2346
11GG|1|I|C|2347
*
11GG|1|I|G|2370
11GG|1|I|G|2371
11GG|1|I|U|2372
11GG|1|I|G|2373
*
11GG|1|I|C|2380
11GG|1|I|A|2381
11GG|1|I|G|2382
11GG|1|I|G|2383
11GG|1|I|U|2384
11GG|1|I|C|2385

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain W

Large ribosomal subunit protein uL18

Chain e

50S ribosomal protein L27

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35