J3_11HE_007
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 11HE|1|28|A|1534, 11HE|1|28|G|1641, 11HE|1|28|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HE_007 not in the Motif Atlas
- Homologous match to J3_9AXU_009
- Geometric discrepancy: 0.056
- The information below is about J3_9AXU_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
11HE|1|28|U|1531
11HE|1|28|G|1532
11HE|1|28|A|1533
11HE|1|28|A|1534
11HE|1|28|C|1535
11HE|1|28|U|1536
11HE|1|28|A|1537
*
11HE|1|28|U|1622
11HE|1|28|A|1623
11HE|1|28|G|1624
*
11HE|1|28|C|1640
11HE|1|28|G|1641
11HE|1|28|A|1642
11HE|1|28|A|1643
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain L8
- 60S ribosomal protein L8
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