J3_9AXU_009

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9AXU|1|2|A|849, 9AXU|1|2|G|956, 9AXU|1|2|A|957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|U|846
9AXU|1|2|G|847
9AXU|1|2|A|848
9AXU|1|2|A|849
9AXU|1|2|C|850
9AXU|1|2|U|851
9AXU|1|2|A|852
*
9AXU|1|2|U|937
9AXU|1|2|A|938
9AXU|1|2|G|939
*
9AXU|1|2|C|955
9AXU|1|2|G|956
9AXU|1|2|A|957
9AXU|1|2|A|958

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL2C

Chain Z

Large ribosomal subunit protein eL15B

Chain v

Large ribosomal subunit protein eL37B

Chain x

Large ribosomal subunit protein eL39