J3_11HE_012

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

11HE|1|28|U|2788, 11HE|1|28|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HE_012 not in the Motif Atlas

Homologous match to J3_9AXU_014

Geometric discrepancy: 0.1322

The information below is about J3_9AXU_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.3

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

11HE|1|28|G|2402
11HE|1|28|A|2403
11HE|1|28|A|2404
11HE|1|28|G|2405
*
11HE|1|28|C|2785
11HE|1|28|C|2786
11HE|1|28|A|2787
11HE|1|28|U|2788
11HE|1|28|A|2789
11HE|1|28|U|2790
11HE|1|28|C|2791
*
11HE|1|28|G|2800
11HE|1|28|U|2801
11HE|1|28|C|2802

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39