J3_9AXU_014

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GAAA*UCAUAAC*GUC

Length

14 nucleotides

Bulged bases

9AXU|1|2|U|1895, 9AXU|1|2|A|1896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9AXU|1|2|G|1522
9AXU|1|2|A|1523
9AXU|1|2|A|1524
9AXU|1|2|A|1525
*
9AXU|1|2|U|1892
9AXU|1|2|C|1893
9AXU|1|2|A|1894
9AXU|1|2|U|1895
9AXU|1|2|A|1896
9AXU|1|2|A|1897
9AXU|1|2|C|1898
*
9AXU|1|2|G|1907
9AXU|1|2|U|1908
9AXU|1|2|C|1909

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain s

Large ribosomal subunit protein eL34B

Chain v

Large ribosomal subunit protein eL37B

Chain x

Large ribosomal subunit protein eL39