J3_11HE_016

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

11HE|1|28|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HE_016 not in the Motif Atlas

Homologous match to J3_8GLP_006

Geometric discrepancy: 0.2126

The information below is about J3_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HE|1|28|A|2551
11HE|1|28|G|2552
11HE|1|28|A|2553
11HE|1|28|U|2554
11HE|1|28|G|2555
*
11HE|1|28|C|2572
11HE|1|28|A|2573
11HE|1|28|G|2574
11HE|1|28|U|2575
*
11HE|1|28|A|2757
11HE|1|28|G|2758
11HE|1|28|G|2759
11HE|1|28|G|2760
11HE|1|28|U|2761
11HE|1|28|G|2762
11HE|1|28|U|2763
11HE|1|28|A|2764
11HE|1|28|A|2765
11HE|1|28|A|2766
11HE|1|28|U|2767

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27