J3_11HE_018

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HE_018 not in the Motif Atlas

Homologous match to J3_9H3G_020

Geometric discrepancy: 0.1232

The information below is about J3_9H3G_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.3

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

11HE|1|28|A|2598
11HE|1|28|G|2599
11HE|1|28|A|2600
11HE|1|28|A|2601
11HE|1|28|G|2602
*
11HE|1|28|C|2737
11HE|1|28|C|2738
*
11HE|1|28|G|2742
11HE|1|28|A|2743
11HE|1|28|A|2744
11HE|1|28|A|2745
11HE|1|28|A|2746
11HE|1|28|U|2747

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain L8

60S ribosomal protein L8

Chain ff

60S ribosomal protein L37a