J3_9H3G_020

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3G|1|A|A|1654
9H3G|1|A|G|1655
9H3G|1|A|A|1656
9H3G|1|A|C|1657
9H3G|1|A|G|1658
*
9H3G|1|A|C|1793
9H3G|1|A|C|1794
*
9H3G|1|A|G|1798
9H3G|1|A|A|1799
9H3G|1|A|A|1800
9H3G|1|A|A|1801
9H3G|1|A|A|1802
9H3G|1|A|U|1803

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BE

Large ribosomal subunit protein eL43y

Chain BQ

Large ribosomal subunit protein uL2z

Chain Fa

Large ribosomal subunit protein eL34z