J3_11HV_002

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

11HV|1|28|C|216, 11HV|1|28|C|217, 11HV|1|28|A|218, 11HV|1|28|G|219, 11HV|1|28|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HV|1|28|C|196
11HV|1|28|A|197
11HV|1|28|A|198
11HV|1|28|G|199
*
11HV|1|28|C|215
11HV|1|28|C|216
11HV|1|28|C|217
11HV|1|28|A|218
11HV|1|28|G|219
11HV|1|28|C|220
11HV|1|28|C|221
11HV|1|28|C|222
11HV|1|28|G|223
11HV|1|28|U|224
11HV|1|28|G|225
11HV|1|28|G|226
11HV|1|28|A|227
11HV|1|28|C|228
*
11HV|1|28|G|240
11HV|1|28|G|241
11HV|1|28|U|242
11HV|1|28|A|243
11HV|1|28|G|244

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4